Is the Fullmetal Alchemist Movie Canon?
The Fullmetal Alchemist movie 'Conqueror of Shamballa' is canon to the original 2003 anime series, tying up its loose ends. However, 'Fullmetal Alchemist: The Sacred Star of Milos' is not canon to Fullmetal Alchemist: Brotherhood.
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Conqueror of Shamballa ties up the 2003 anime, so yeah it's canon. Milos? Not so much!
Conqueror of Shamballa is canon for the 2003 series, but Sacred Star of Milos? Not canon for Brotherhood. Enjoy both as extra content!
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